Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 18021

Identification

Species:
Ostreococcus tauri
Gene model
18021
Description
e_gw1.06.00.250.1
Family
Sigma70-like
3D structure (top 5)
1L9Z 1RP3 1SIG 1L0O 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Cyanidioschyzon merolae

CMQ213C Score: 1

Chlorella sp. NC64A

35462 Score: 1

Carica papaya

evm.TU.supercontig_56.12 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g16430.1 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

780378 Score: 1

Sorghum bicolor

4779347 Score: 1

Selaginella moellendorffii

117159 Score: 1

Vitis vinifera

GSVIVP00022983001 Score: 1

Zea mays

GRMZM2G003182_P01 Score: 1
GRMZM2G090783_P01 Score: 1
GRMZM2G100086_P01 Score: 1
GRMZM2G164084_P01 Score: 1

Expression data

Expressed Sequence Tags

Ppa.1
Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872
Ppa.18172
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_160930) mRNA, complete cds /cds=p(243,2018) /gb=XM_001757423

Domain Architecture

Sigma70_r1_2 PF00140 18021
DomainStartEndBit scoreE-value
Sigma70_r1_21046608.1e-15
Sigma70_r291161961.1e-25
Sigma70_r316524847.54.6e-11
Sigma70_r4260313983e-26

Sequences

protein sequence
transcript sequence