Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 180264

Identification

Species:
Physcomitrella patens
Gene model
180264
Description
estExt_gwp_gw1.C_410063
Family
CSD
3D structure (top 5)
1H95 1MJC 1C9O 2K5N 2KCM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_6.256 Score: 1

Physcomitrella patens

180264 Score: 1
47533 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Physcomitrella patens

180264 Score: 1
183211 Score: 1

Populus trichocarpa

556614 Score: 1
754616 Score: 1

Selaginella moellendorffii

186937 Score: 1

Vitis vinifera

GSVIVP00036773001 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
At.24348
glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] /cds=p(56,667) /gb=S47408
At.73207
Arabidopsis thaliana CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding (CSDP2/GRP2) mRNA, complete cds /cds=p(332,943) /gb=NM_120029
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Ppa.15638
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180264) mRNA, complete cds /cds=p(263,826) /gb=XM_001760093
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837

Domain Architecture

CSD PF00313 180264
DomainStartEndBit scoreE-value
CSD1380115.51.6e-31
zf-CCHC13214934.34.5e-07
zf-CCHC16618326.69.4e-05

Sequences