Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 181547

Identification

Species:
Physcomitrella patens
Gene model
181547
Description
estExt_gwp_gw1.C_500074
Family
Orphans
3D structure (top 5)
1Y8O 1GKZ 2AYX 1B3Q 3D36
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484101 Score: 1

Arabidopsis thaliana

AT2G01830.1 Score: 1
AT2G01830.2 Score: 1
AT2G01830.3 Score: 1

Carica papaya

evm.TU.supercontig_2.134 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g50860.1 Score: 1

Ostreococcus tauri

37456 Score: 1

Populus trichocarpa

421496 Score: 1

Sorghum bicolor

5048269 Score: 1

Selaginella moellendorffii

231095 Score: 1

Vitis vinifera

GSVIVP00029130001 Score: 1

Zea mays

GRMZM2G067775_P01 Score: 1
GRMZM2G155767_P01 Score: 1
GRMZM2G039696_P02 Score: 0.903
GRMZM2G151694_P02 Score: 0.903

Expression data

Expressed Sequence Tags

At.10485
Arabidopsis thaliana mRNA for cytokinin receptor CRE1b, complete cds /cds=p(69,3311) /gb=AB049935
At.23233
Arabidopsis thaliana AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) (AHK2) mRNA, complete cds /cds=p(1,3531) /gb=NM_122966
At.24547
Arabidopsis thaliana AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) (AHK3) mRNA, complete cds /cds=p(1,3111) /gb=NM_102494
Hv.14813
HD14I03r HD Hordeum vulgare cDNA clone HD14I03 5-PRIME, mRNA sequence /clone=HD14I03 /clone_end=5' /gb=BU993749
Mtr.11274
MTNAE06TKM KVKC Medicago truncatula cDNA clone pKVKC-5A6, mRNA sequence /clone=pKVKC-5A6 /gb=BQ255277
Mtr.13890
s13dNF61A03MJ017_271039 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence /gb=CX532373
Os.57975
Oryza sativa (japonica cultivar-group) Os02g0738400 (Os02g0738400) mRNA, complete cds /cds=p(1,3075) /gb=NM_001054596
Os.83245
65961rsicem_11307.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK071782
Ppa.20911
CAYY32197.rev CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY32197 3', mRNA sequence /clone=CAYY32197 /clone_end=3' /gb=FC360087
Vvi.6934
CAbud0001_IVF_B06 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0001_IVF_B06 5', mRNA sequence /clone=CAbud0001_IVF_B06 /clone_end=5' /gb=CF510980
Vvi.8239
WIN029.TB24_B03 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN029_B03 3', mRNA sequence /clone=WIN029_B03 /clone_end=3' /gb=EC925503

Domain Architecture

CHASE PF03924 181547
DomainStartEndBit scoreE-value
CHASE112324236.94.4e-68
HisKA38545087.15.7e-23
HATPase_c497696109.41.1e-29
Response_reg8841015106.21e-28

Sequences