Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 182782

Identification

Species:
Physcomitrella patens
Gene model
182782
Description
estExt_gwp_gw1.C_590273
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RHK 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

317994 Score: 1

Arabidopsis thaliana

AT3G12130.1 Score: 1

Carica papaya

evm.TU.supercontig_235.4 Score: 1

Ostreococcus lucimarinus

93911 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10080.1 Score: 1

Ostreococcus tauri

37617 Score: 1

Populus trichocarpa

829302 Score: 1

Sorghum bicolor

5054839 Score: 1

Vitis vinifera

GSVIVP00003737001 Score: 1

Zea mays

GRMZM2G071034_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Os.4265
Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence /cds=p(1178,2080) /gb=AK242341
Pba.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Pba.6053
WS02546.C21.1_E02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E02 3', mRNA sequence /clone=WS02546_E02 /clone_end=3' /gb=DT490896
Ppa.9116
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_182782) mRNA, complete cds /cds=p(1,921) /gb=XM_001763099
Pth.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Vvi.13807
WIN1017.C21_C23 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN1017_C23 3', mRNA sequence /clone=WIN1017_C23 /clone_end=3' /gb=EC973909
Vvi.15871
WIN0813.C21_O23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_O23 3', mRNA sequence /clone=WIN0813_O23 /clone_end=3' /gb=EC962242

Domain Architecture

zf-CCCH PF00642 182782
DomainStartEndBit scoreE-value
zf-CCCH497522.30.0016
zf-CCCH11814429.99e-06
KH_1187249552.5e-13
zf-CCCH27229741.23.7e-09

Sequences