Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 187995

Identification

Species:
Physcomitrella patens
Gene model
187995
Description
estExt_gwp_gw1.C_1140075
Family
C3H
3D structure (top 5)
2CSY 1Z6U 3FL2 2CKL 1JM7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

887320 Score: 1

Arabidopsis thaliana

AT5G06420.1 Score: 1
AT5G06420.2 Score: 1

Chlorella sp. NC64A

31479 Score: 1

Carica papaya

evm.TU.supercontig_273.5 Score: 1

Chlamydomonas reinhardtii

134186 Score: 1

Coccomyxa sp. C-169

81230 Score: 1

Micromonas pusilla CCMP1545

4888 Score: 1

Micromonas sp. RCC299

70339 Score: 1

Ostreococcus lucimarinus

5242 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g19804.1 Score: 1

Ostreococcus tauri

13091 Score: 1

Populus trichocarpa

731318 Score: 1

Sorghum bicolor

4882757 Score: 1

Selaginella moellendorffii

406998 Score: 1

Zea mays

AC191337.4_FGP036 Score: 1

Expression data

Expressed Sequence Tags

At.42654
Arabidopsis thaliana putative protein (At5g06420) mRNA, complete cds /cds=p(689,1825) /gb=AY136406
At.48142
Arabidopsis thaliana nucleic acid binding (AT1G01350) mRNA, complete cds /cds=p(177,1208) /gb=NM_100017
Hv.8921
HVSMEh0091D10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0091D10f, mRNA sequence /clone=HVSMEh0091D10f /gb=BE196046
Os.6111
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence /gb=CT831567
Pba.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393
Ppa.8545
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_187995) mRNA, complete cds /cds=p(168,1175) /gb=XM_001769379
Pth.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393

Domain Architecture

zf-CCCH PF00642 187995
DomainStartEndBit scoreE-value
zf-CCCH19221843.76.5e-10
zf-C3HC426930626.88.1e-05

Sequences