Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 189373

Identification

Species:
Physcomitrella patens
Gene model
189373
Description
estExt_gwp_gw1.C_1320001
Family
SNF2
3D structure (top 5)
1WP9 3DMQ 2FWR 1Z3I 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475211 Score: 1

Arabidopsis thaliana

AT1G50410.1 Score: 1

Cyanidioschyzon merolae

CMI119C Score: 1

Carica papaya

evm.TU.supercontig_27.89 Score: 1

Coccomyxa sp. C-169

70968 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g57110.1 Score: 1
LOC_Os01g57110.2 Score: 1

Ostreococcus tauri

20757 Score: 1

Populus trichocarpa

234045 Score: 1

Sorghum bicolor

5053814 Score: 1

Selaginella moellendorffii

429547 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.006
GSVIVP00004267001 Score: 1

Zea mays

GRMZM2G149157_P02 Score: 1

Expression data

Expressed Sequence Tags

At.36526
Arabidopsis thaliana EDA16 (embryo sac development arrest 16) (EDA16) mRNA, complete cds /cds=p(742,4110) /gb=NM_001124053
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Ppa.15038
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112295) mRNA, partial cds /cds=p(1,2190) /gb=XM_001752316
Ppa.25552
CAYZ29018.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ29018 5', mRNA sequence /clone=CAYZ29018 /clone_end=5' /gb=FC407134
Ppa.26004
CAYZ7958.rev CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ7958 3', mRNA sequence /clone=CAYZ7958 /clone_end=3' /gb=FC426798
Ppa.2900
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1528) mRNA, complete cds /cds=p(1,4158) /gb=XM_001770935
Sbi.10681
OX1_64_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_64_A10_A002 5', mRNA sequence /clone=OX1_64_A10_A002 /clone_end=5' /gb=CN138552 /gi=45973096

Domain Architecture

SNF2_N PF00176 189373
DomainStartEndBit scoreE-value
SNF2_N92506172.89.2e-49
zf-C3HC454558518.40.00073
Helicase_C721799761.2e-19

Sequences