Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 199890

Identification

Species:
Populus trichocarpa
Gene model
199890
Description
gw1.IX.355.1
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481629 Score: 1

Arabidopsis thaliana

AT2G27300.1 Score: 1

Carica papaya

evm.TU.supercontig_195.31 Score: 1

Vitis vinifera

GSVIVP00037297001 Score: 1

Expression data

Expressed Sequence Tags

At.1032
Arabidopsis thaliana putative NAC2 protein (At3g49530) mRNA, complete cds /cds=p(197,1606) /gb=AY059734
At.20744
Arabidopsis thaliana no apical meristem (NAM) family protein (AT4G35580) mRNA, complete cds /cds=p(58,1662) /gb=NM_001125650
At.21933
Arabidopsis thaliana ANAC053 (Arabidopsis NAC domain containing protein 53); transcription factor (ANAC053) mRNA, complete cds /cds=p(229,1878) /gb=NM_111885
At.36167
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX823820
At.40004
Arabidopsis thaliana ANAC014 (ANAC014) mRNA, complete cds /cds=p(29,1987) /gb=NM_202225
At.41017
Arabidopsis thaliana ANAC045 (Arabidopsis NAC domain containing protein 45); transcription factor (ANAC045) mRNA, complete cds /cds=p(1,1440) /gb=NM_111190
At.50709
Arabidopsis thaliana ANAC086 (Arabidopsis NAC domain containing protein 86); transcription factor (ANAC086) mRNA, complete cds /cds=p(1,1431) /gb=NM_121732
At.52935
Arabidopsis thaliana ANAC040/NTL8 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 40); transcription factor (ANAC040/NTL8) mRNA, complete cds /cds=p(1,1008) /gb=NM_128289
At.7356
Arabidopsis thaliana ANAC089 (Arabidopsis NAC domain containing protein 89); transcription factor (ANAC089) mRNA, complete cds /cds=p(147,1169) /gb=NM_122134
Hv.23644
Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds /cds=p(11,1306) /gb=AB362161
Hv.4825
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence /gb=AK249749
Hv.5295
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf28m08, mRNA sequence /gb=AK249396
Mtr.12198
EST611135 KVKC Medicago truncatula cDNA clone pKVKC-7D7, mRNA sequence /clone=pKVKC-7D7 /gb=BQ165266
Os.12020
Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence /cds=p(759,2108) /gb=AK099540
Os.83155
Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds /cds=p(1,1953) /gb=AB265821
Os.9354
Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence /cds=p(84,2054) /gb=AK120773
Sbi.17975
OX1_38_A01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_38_A01_A002 5', mRNA sequence /clone=OX1_38_A01_A002 /clone_end=5' /gb=CN135689 /gi=45968055

Domain Architecture

NAM PF02365 199890
DomainStartEndBit scoreE-value
NAM14141236.65.4e-68

Sequences