Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 202953

Identification

Species:
Populus trichocarpa
Gene model
202953
Description
gw1.IX.3418.1
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

909325 Score: 1

Arabidopsis thaliana

AT5G13730.1 Score: 1

Chlorella sp. NC64A

35462 Score: 1

Carica papaya

evm.TU.supercontig_125.40 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Micromonas sp. RCC299

109173 Score: 1

Vitis vinifera

GSVIVP00028718001 Score: 1

Expression data

Expressed Sequence Tags

At.49018
Arabidopsis thaliana sigma-like factor (MSH12.20) mRNA, complete cds /cds=p(89,892) /gb=AY059907

Domain Architecture

Sigma70_r2 PF04542 202953
DomainStartEndBit scoreE-value
Sigma70_r210517583.95.1e-22
Sigma70_r317926147.93.6e-11
Sigma70_r4274327607.9e-15

Sequences