Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 204649

Identification

Species:
Populus trichocarpa
Gene model
204649
Description
gw1.V.50.1
Family
C3H
3D structure (top 5)
2D9N 2RHK 2RPP 3D2N 2E5S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G21570.1 Score: 1

Carica papaya

evm.TU.supercontig_1156.4 Score: 1

Selaginella moellendorffii

70673 Score: 1

Vitis vinifera

GSVIVP00015456001 Score: 1

Expression data

Expressed Sequence Tags

At.41648
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G21570) mRNA, complete cds /cds=p(1,1413) /gb=NM_102006
Hv.29470
RUS113B09r HY Hordeum vulgare subsp. vulgare cDNA clone HY02I16, mRNA sequence /clone=HY02I16 /gb=FD524654
Mtr.21570
MEUAY59TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE351191
Pba.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Pba.6719
WS02537.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_O10 3', mRNA sequence /clone=WS02537_O10 /clone_end=3' /gb=DT488953
Pth.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Pth.6719
WS02537.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_O10 3', mRNA sequence /clone=WS02537_O10 /clone_end=3' /gb=DT488953
Vvi.5890
WIN025.TB24.1_B18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_B18 3', mRNA sequence /clone=WIN025_B18 /clone_end=3' /gb=EC924347

Domain Architecture

zf-CCCH PF00642 204649
DomainStartEndBit scoreE-value
zf-CCCH24026713.40.024
zf-CCCH29531912.10.034
zf-CCCH3223476.30.2
zf-CCCH34837018.40.005

Sequences