Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 206687

Identification

Species:
Physcomitrella patens
Gene model
206687
Description
estExt_Genewise1.C_340313
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Carica papaya

evm.TU.supercontig_56.12 Score: 1

Coccomyxa sp. C-169

18553 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g26160.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Populus trichocarpa

780378 Score: 1

Sorghum bicolor

4779347 Score: 1

Vitis vinifera

GSVIVP00032140001 Score: 1

Zea mays

GRMZM2G143392_P01 Score: 1

Expression data

Expressed Sequence Tags

Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Ppa.1
Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872
Ppa.18172
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_160930) mRNA, complete cds /cds=p(243,2018) /gb=XM_001757423
Ppa.24245
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_178031) mRNA, complete cds /cds=p(1,1752) /gb=XM_001757532

Domain Architecture

Sigma70_r1_2 PF00140 206687
DomainStartEndBit scoreE-value
Sigma70_r1_226129760.65.5e-15
Sigma70_r234041097.93.2e-26
Sigma70_r3414496127.34.3e-35
Sigma70_r45085611007.3e-27

Sequences