Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 207883

Identification

Species:
Populus trichocarpa
Gene model
207883
Description
gw1.V.3284.1
Family
Jumonji

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478089 Score: 1

Arabidopsis thaliana

AT3G07610.1 Score: 1

Chlorella sp. NC64A

139911 Score: 1

Carica papaya

evm.TU.supercontig_707.1 Score: 1

Coccomyxa sp. C-169

77471 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g58210.2 Score: 1
LOC_Os02g58210.1 Score: 0.995

Physcomitrella patens

154856 Score: 1

Sorghum bicolor

4885362 Score: 1

Vitis vinifera

GSVIVP00031870001 Score: 1

Populus trichocarpa

207634 Score: 1
207883 Score: 1

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G080760_P01 Score: 1
GRMZM2G080760_P02 Score: 0.987
GRMZM2G115717_P01 Score: 0.934

Expression data

Expressed Sequence Tags

At.18334
Arabidopsis thaliana IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor (IBM1) mRNA, complete cds /cds=p(1,3084) /gb=NM_111640
At.3531
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT4G00990) mRNA, complete cds /cds=p(92,2614) /gb=NM_116327
Hv.4909
BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812
Mtr.22381
METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949
Os.18195
Oryza sativa Japonica Group cDNA clone:J033020J08, full insert sequence /gb=AK073195
Os.50915
Oryza sativa Japonica Group cDNA clone:001-028-A06, full insert sequence /cds=p(115,1254) /gb=AK059445
Os.6505
Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145
Os.79778
Oryza sativa (japonica cultivar-group) Os02g0109400 (Os02g0109400) mRNA, complete cds /cds=p(1,2994) /gb=NM_001052179
Ppa.19248
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_118936) mRNA, partial cds /cds=p(1,1998) /gb=XM_001757080
Ppa.20723
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_154856) mRNA, complete cds /cds=p(1,2082) /gb=XM_001785065
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.4830
CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

Domain Architecture

JmjC PF02373 207883
DomainStartEndBit scoreE-value
JmjC49261051.52.9e-12

Sequences