Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 209543

Identification

Species:
Physcomitrella patens
Gene model
209543
Description
estExt_Genewise1.C_540294
Family
Orphans
3D structure (top 5)
2BTZ 2Q8G 1YSR 2C2A 2E0A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475737 Score: 1

Arabidopsis thaliana

AT1G66340.1 Score: 1

Carica papaya

evm.TU.supercontig_84.51 Score: 1

Populus trichocarpa

740887 Score: 1

Selaginella moellendorffii

110685 Score: 1

Vitis vinifera

GSVIVP00000993001 Score: 1

Expression data

Expressed Sequence Tags

At.21783
Arabidopsis thaliana ERS1 (ETHYLENE RESPONSE SENSOR 1); receptor (ERS1) mRNA, complete cds /cds=p(244,2085) /gb=NM_129658
At.43238
Arabidopsis thaliana mRNA for putative proline-rich protein, complete cds, clone: RAFL24-18-G02 /cds=p(2364,2768) /gb=AK230334
Hv.2363
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf107g20, mRNA sequence /gb=AK251312
Hv.592
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf104b09, mRNA sequence /gb=AK250968
Hv.6959
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf53p12, mRNA sequence /gb=AK249746
Os.1377
Oryza sativa Japonica Group cDNA clone:J013002C04, full insert sequence /cds=p(164,2074) /gb=AK065161
Os.7454
Oryza sativa Japonica Group cDNA clone:001-022-C09, full insert sequence /gb=AK111944
Os.88278
Oryza sativa Japonica Group cDNA clone:J023007F11, full insert sequence /cds=p(545,2101) /gb=AK111696
Ppa.13029
Physcomitrella patens subsp. patens ETR3 ethylene receptor protein (ETR3) mRNA, complete cds /cds=p(491,2734) /gb=XM_001762393
Ppa.1633
Physcomitrella patens subsp. patens ETR7 ethylene receptor (ETR7) mRNA, complete cds /cds=p(1,2292) /gb=XM_001774357
Ppa.2015
Physcomitrella patens ETR1 mRNA for ethylene receptor homolog, complete cds, clone: Ppa-ETR1-11 /cds=p(49,2382) /gb=AB298445
Ppa.24085
Physcomitrella patens ETR1 mRNA for ethylene receptor homolog partial region, complete cds, clone: Ppa-ETR1-18 /cds=p(20,1177) /gb=AB298446
Ppa.602
Physcomitrella patens ETR2 mRNA for ethylene receptor homolog, complete cds, clone: Ppa-ETR2-91 /cds=p(1,2304) /gb=AB298450
Vvi.85
Vitis vinifera putative ethylene receptor (ETR1) mRNA, complete cds /cds=p(180,2405) /gb=AF243474

Domain Architecture

GAF PF01590 209543
DomainStartEndBit scoreE-value
GAF158306476.7e-11
HisKA34240787.93.3e-23
HATPase_c454585130.64.6e-36
Response_reg615732103.66e-28

Sequences