Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 209618

Identification

Species:
Physcomitrella patens
Gene model
209618
Description
estExt_Genewise1.C_550091
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.28593
Arabidopsis thaliana SET domain-containing protein (AT5G14260) mRNA, complete cds /cds=p(149,1693) /gb=NM_180707
Hv.5742
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf3a05, mRNA sequence /gb=AK253114
Mtr.12292
NF101G05PL1F1038 Phosphate starved leaf Medicago truncatula cDNA clone NF101G05PL 5', mRNA sequence /clone=NF101G05PL /clone_end=5' /gb=BG457387
Os.6384
Oryza sativa Japonica Group cDNA clone:J013134J07, full insert sequence /gb=AK068145
Pba.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032
Ppa.10744
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_209618) mRNA, complete cds /cds=p(75,1358) /gb=XM_001762516
Ppa.1495
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_141673) mRNA, complete cds /cds=p(1,1572) /gb=XM_001774713
Pth.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032

Domain Architecture

SET PF00856 209618
DomainStartEndBit scoreE-value
SET325290.26.7e-24
Rubis-subs-bind27539660.36.5e-15

Sequences