Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 212943

Identification

Species:
Physcomitrella patens
Gene model
212943
Description
estExt_Genewise1.C_840108
Family
SET
3D structure (top 5)
2R3A 1H3I 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

117602 Score: 1
212943 Score: 0.95

Chlorella sp. NC64A

14389 Score: 1

Chlamydomonas reinhardtii

115484 Score: 1

Physcomitrella patens

133280 Score: 1
212943 Score: 1

Micromonas sp. RCC299

73010 Score: 1

Physcomitrella patens

117602 Score: 1
212943 Score: 1

Populus trichocarpa

261219 Score: 1

Sorghum bicolor

4748868 Score: 1

Expression data

Expressed Sequence Tags

Os.87730
Oryza sativa Japonica Group cDNA clone:002-110-B02, full insert sequence /gb=AK112101
Os.93737
82233rsicen_20540.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK082312
Ppa.21072
CAYY5174.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY5174 5', mRNA sequence /clone=CAYY5174 /clone_end=5' /gb=FC367220
Sbi.4414
FE1_16_G08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_16_G08_A002 3', mRNA sequence /clone=FE1_16_G08_A002 /clone_end=3' /gb=CF071203 /gi=33107862

Domain Architecture

SET PF00856 212943
DomainStartEndBit scoreE-value
SET6140150.83.8e-42

Sequences