Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 21479

Identification

Species:
Micromonas pusilla CCMP1545
Gene model
21479
Description
e_gw1.12.277.1
Family
MYB-related
3D structure (top 5)
1IRZ 1OFC 2ELK 2CU7 2YUM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

891746 Score: 1

Arabidopsis thaliana

AT1G49010.1 Score: 1

Carica papaya

evm.TU.supercontig_112.57 Score: 1

Coccomyxa sp. C-169

70912 Score: 1

Micromonas sp. RCC299

105391 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g34060.1 Score: 1

Ostreococcus tauri

23487 Score: 1

Physcomitrella patens

26829 Score: 1

Populus trichocarpa

421999 Score: 1

Sorghum bicolor

5058138 Score: 1

Selaginella moellendorffii

47768 Score: 1

Vitis vinifera

GSVIVP00017631001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.38318
Arabidopsis thaliana myb family transcription factor (AT1G49010) mRNA, complete cds /cds=p(70,1014) /gb=NM_103794
At.46819
Arabidopsis thaliana myb family transcription factor (AT2G38090) mRNA, complete cds /cds=p(568,1464) /gb=NM_129365
At.7757
Arabidopsis thaliana myb family transcription factor (AT5G58900) mRNA, complete cds /cds=p(668,1534) /gb=NM_125280
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Os.1619
Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence /cds=p(288,1172) /gb=AK067964
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Sbi.14152
DG1_123_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356185
Vvi.10013
WIN0520.C21_A24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0520_A24 3', mRNA sequence /clone=WIN0520_A24 /clone_end=3' /gb=EC940561
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110

Domain Architecture

Myb_DNA-binding PF00249 21479
DomainStartEndBit scoreE-value
Myb_DNA-binding112159422.4e-09

Sequences