Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 218417

Identification

Species:
Populus trichocarpa
Gene model
218417
Description
gw1.VII.2722.1
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

883225 Score: 1

Arabidopsis thaliana

AT1G56010.2 Score: 1

Carica papaya

evm.TU.supercontig_10.22 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g46270.1 Score: 1

Sorghum bicolor

4771445 Score: 1

Vitis vinifera

GSVIVP00025798001 Score: 1

Zea mays

GRMZM2G063522_P01 Score: 1

Expression data

Expressed Sequence Tags

At.23511
Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds /cds=p(196,1203) /gb=BT005713
At.27282
Arabidopsis thaliana ANAC059/ATNAC3 (Arabidopsis NAC domain containing protein 59); protein heterodimerization/ transcription factor (ANAC059/ATNAC3) mRNA, complete cds /cds=p(175,1131) /gb=NM_113825
At.48312
Arabidopsis thaliana NAC1 (Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22); transcription factor (NAC1) mRNA, complete cds /cds=p(138,1112) /gb=NM_104479
At.53370
47-L020254-065-002-G06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 002-G06, mRNA sequence /clone=002-G06 /gb=DR750602
At.55538
Arabidopsis thaliana CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (CUC2) mRNA, complete cds /cds=p(29,1156) /gb=NM_124774
At.7461
Arabidopsis thaliana ANAC100/ATNAC5 (Arabidopsis NAC domain containing protein 100); transcription factor (ANAC100/ATNAC5) mRNA, complete cds /cds=p(209,1219) /gb=NM_125536
Mtr.3392
EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence /clone=MTYAW81 /gb=DW017692
Os.18414
Oryza sativa (japonica cultivar-group) Os06g0344900 (Os06g0344900) mRNA, complete cds /cds=p(1,1122) /gb=NM_001064113
Os.51378
Oryza sativa Japonica Group cDNA clone:001-105-G11, full insert sequence /cds=p(105,1076) /gb=AK062675
Os.53228
Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence /gb=AK071464
Os.87559
CT854494 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCPI214C18, mRNA sequence /clone=OSIGCPI214C18 /gb=CT854494
Os.9492
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence /gb=CT834765
Ptp.4986
I018P65P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence /gb=BI123181
Sbi.2198
ETH1_14_G07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_14_G07_A002 5', mRNA sequence /clone=ETH1_14_G07_A002 /clone_end=5' /gb=CD429611 /gi=31345254
Sbi.7063
ANR1_2_E11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_2_E11_A002 5', mRNA sequence /clone=ANR1_2_E11_A002 /clone_end=5' /gb=CX606383 /gi=57803843
Vvi.2352
S7B00671 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B00671, mRNA sequence /clone=S7B00671 /gb=EE093464

Domain Architecture

NAM PF02365 218417
DomainStartEndBit scoreE-value
NAM19143265.89.2e-77

Sequences