Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 219537

Identification

Species:
Populus trichocarpa
Gene model
219537
Description
gw1.VII.3842.1
Family
C3H
3D structure (top 5)
1V32 2BZE 1XD4 2II0 1UHR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

906461 Score: 1

Arabidopsis thaliana

AT3G51120.1 Score: 1

Carica papaya

evm.TU.supercontig_6.209 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g36090.1 Score: 1

Sorghum bicolor

5053693 Score: 1

Vitis vinifera

GSVIVP00035957001 Score: 1

Zea mays

GRMZM2G078379_P01 Score: 1

Expression data

Expressed Sequence Tags

At.13556
Arabidopsis thaliana PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (AT2G18090) mRNA, complete cds /cds=p(188,2662) /gb=NM_179640
At.40269
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein (AT2G16480) mRNA, complete cds /cds=p(1,1152) /gb=NM_127201
Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Pba.1875
WS0233.B21_H06 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_H06 3', mRNA sequence /clone=WS0233_H06 /clone_end=3' /gb=CV239778
Pth.15398
WS02513.B21_E16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02513_E16 3', mRNA sequence /clone=WS02513_E16 /clone_end=3' /gb=CV241806
Pth.1875
WS0233.B21_H06 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_H06 3', mRNA sequence /clone=WS0233_H06 /clone_end=3' /gb=CV239778

Domain Architecture

AT_hook PF02178 219537
DomainStartEndBit scoreE-value
AT_hook11310.60.35
SWIB25232798.32.5e-26
Plus-3388495169.96.7e-48
GYF65771239.21.5e-08
zf-CCCH1232125612.70.029

Sequences