Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 221370

Identification

Species:
Physcomitrella patens
Gene model
221370
Description
estExt_Genewise1.C_2120018
Family
Orphans
3D structure (top 5)
2CR7 2CZY 1E91 1G1E 2F05
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Mtr.19146
EST1226444 MTY Medicago truncatula cDNA clone MTYAU20, mRNA sequence /clone=MTYAU20 /gb=DW017483
Os.82929
22441rsicee_8238.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CF989805
Ppa.17144
Physcomitrella patens subsp. patens putative histone deacetylase complex, SIN3 component (SNT1502) mRNA, partial cds /cds=p(1,3957) /gb=XM_001784335
Sbi.13185
EM1_7_B07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence /gb=BG158002

Domain Architecture

PAH PF02671 221370
DomainStartEndBit scoreE-value
PAH17722352.51.5e-12
HDAC_interact313413192.41.1e-54

Sequences