Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 221736

Identification

Species:
Physcomitrella patens
Gene model
221736
Description
estExt_Genewise1.C_2180024
Family
C2H2
3D structure (top 5)
2I13 1TF6 1UBD 2JP9 2RPC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484116 Score: 1

Arabidopsis thaliana

AT2G01940.1 Score: 1
AT2G01940.3 Score: 0.972

Carica papaya

evm.TU.supercontig_2.109 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g36390.1 Score: 1

Populus trichocarpa

569394 Score: 1

Sorghum bicolor

4970985 Score: 1

Vitis vinifera

GSVIVP00030657001 Score: 1

Zea mays

GRMZM2G141031_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
Mtr.17317
NF078A11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF078A11IN 5', mRNA sequence /clone=NF078A11IN /clone_end=5' /gb=BI265111
Os.50005
Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence /gb=AK119595
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.80098
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence /gb=CT837698
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.2108
Populus trichocarpa clone WS01227_A11 unknown mRNA /cds=p(18,1286) /gb=EF147067
Pth.559
Populus trichocarpa clone WS0122_O19 unknown mRNA /cds=p(1043,1366) /gb=EF147359
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 221736
DomainStartEndBit scoreE-value
zf-C2H2678927.35.5e-05
zf-C2H214416623.60.00073
zf-C2H217019217.80.041

Sequences