Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 227225

Identification

Species:
Physcomitrella patens
Gene model
227225
Description
estExt_Genewise1.C_4030018
Family
SET
3D structure (top 5)
1MVH 2R3A 2RFI 3F9X 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489297 Score: 1

Arabidopsis thaliana

AT5G24330.1 Score: 1

Carica papaya

evm.TU.supercontig_42.113 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g03030.1 Score: 1

Populus trichocarpa

422428 Score: 1

Sorghum bicolor

4755160 Score: 1

Selaginella moellendorffii

145424 Score: 1

Vitis vinifera

GSVIVP00037225001 Score: 1

Zea mays

GRMZM2G006032_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27076
Arabidopsis thaliana ATXR5 (SETDOMAIN GROUP 15) (ATXR5) mRNA, complete cds /cds=p(1,1140) /gb=NM_001085090
At.30965
Arabidopsis thaliana ATXR6 (Arabidopsis thaliana Trithorax- related protein 6); DNA binding (ATXR6) mRNA, complete cds /cds=p(72,1121) /gb=NM_122341
Hv.28693
HDP41D14w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP41D14, mRNA sequence /clone=HDP41D14 /gb=EX593201
Os.26985
Oryza sativa Japonica Group cDNA, clone: J075073G20, full insert sequence /gb=AK241918
Ppa.4791
Physcomitrella patens subsp. patens predicted protein (SDG1537) mRNA, complete cds /cds=p(49,963) /gb=XM_001784345
Vvi.17592
WIN1120.C21_A18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1120_A18 3', mRNA sequence /clone=WIN1120_A18 /clone_end=3' /gb=EC983830

Domain Architecture

SET PF00856 227225
DomainStartEndBit scoreE-value
SET16429974.53.5e-19

Sequences