Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 229700

Identification

Species:
Populus trichocarpa
Gene model
229700
Description
gw1.X.4397.1
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 2RHK 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477944 Score: 1

Arabidopsis thaliana

AT5G18550.1 Score: 1

Carica papaya

evm.TU.supercontig_9.180 Score: 1

Micromonas sp. RCC299

60560 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15460.3 Score: 1
LOC_Os01g15460.1 Score: 0.99
LOC_Os01g15460.2 Score: 0.99

Sorghum bicolor

4797888 Score: 1

Vitis vinifera

GSVIVP00019796001 Score: 1

Zea mays

GRMZM2G086994_P01 Score: 1
GRMZM2G086994_P02 Score: 1
GRMZM2G086994_P04 Score: 1

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
At.22535
Arabidopsis thaliana nucleic acid binding (AT5G18550) mRNA, complete cds /cds=p(338,1735) /gb=NM_121860
At.27771
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-11-O09 /cds=p(267,1655) /gb=AK230312
Mtr.10686
EST647280 HOGA Medicago truncatula cDNA clone HOGA-31I22, mRNA sequence /clone=HOGA-31I22 /gb=CB894488
Os.9029
Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence /cds=p(298,1698) /gb=AK073920
Os.9931
Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence /cds=p(333,1727) /gb=AK111633
Vvi.8684
WIN1149.C21_O06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1149_O06 3', mRNA sequence /clone=WIN1149_O06 /clone_end=3' /gb=EC993939

Domain Architecture

zf-CCCH PF00642 229700
DomainStartEndBit scoreE-value
zf-CCCH487442.12e-09
zf-CCCH9412046.68.5e-11
zf-CCCH140166431.1e-09
zf-CCCH30232841.53.1e-09
zf-CCCH34837435.71.6e-07

Sequences