Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 229952

Identification

Species:
Populus trichocarpa
Gene model
229952
Description
gw1.X.4649.1
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

332974 Score: 1

Arabidopsis thaliana

AT4G13460.1 Score: 1
AT4G13460.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g25450.1 Score: 1

Sorghum bicolor

4789504 Score: 1

Vitis vinifera

GSVIVP00020373001 Score: 1

Zea mays

GRMZM2G025924_P01 Score: 1
GRMZM2G112145_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12115
Arabidopsis thaliana SUVH2 (SU(VAR)3-9 HOMOLOG 2) (SUVH2) mRNA, complete cds /cds=p(115,2070) /gb=NM_128889
At.3118
Arabidopsis thaliana SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding (SUVH9) mRNA, complete cds /cds=p(400,2352) /gb=NM_001036548
Os.26478
Oryza sativa Japonica Group cDNA clone:J013097K17, full insert sequence /cds=p(299,2353) /gb=AK067172

Domain Architecture

YDG_SRA PF02182 229952
DomainStartEndBit scoreE-value
YDG_SRA73229308.21.6e-89
Pre-SET259357112.41.4e-30
SET359514122.11.7e-33

Sequences