Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 230140

Identification

Species:
Physcomitrella patens
Gene model
230140
Description
fgenesh2_pg.scaffold_92000013
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489269 Score: 1

Arabidopsis thaliana

AT5G24120.1 Score: 1

Carica papaya

evm.TU.supercontig_3.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50930.1 Score: 1

Populus trichocarpa

591382 Score: 1

Sorghum bicolor

5010228 Score: 1

Selaginella moellendorffii

53596 Score: 1

Vitis vinifera

GSVIVP00006496001 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697
Ppa.11279
Physcomitrella patens PpSig5 mRNA for plastid sigma factor PpSIG5, complete cds /cds=p(536,2434) /gb=AB189171

Domain Architecture

Sigma70_r2 PF04542 230140
DomainStartEndBit scoreE-value
Sigma70_r2398470752.4e-19
Sigma70_r347455525.50.00012
Sigma70_r456762056.41e-13
MerR59262619.70.011

Sequences