Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 231462

Identification

Species:
Populus trichocarpa
Gene model
231462
Description
gw1.X.6159.1
Family
GNAT
3D structure (top 5)
2OB0 1TIQ 2I79 1UFH 2I6C
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Coccomyxa sp. C-169

73135 Score: 1

Sorghum bicolor

5057336 Score: 1

Selaginella moellendorffii

428677 Score: 1

Populus trichocarpa

231462 Score: 1
564771 Score: 1

Zea mays

GRMZM2G057554_P01 Score: 1
GRMZM2G057554_P02 Score: 1
GRMZM2G073972_P01 Score: 1
GRMZM2G073972_P02 Score: 1

Expression data

Expressed Sequence Tags

At.19813
Arabidopsis thaliana GCN5-related N-acetyltransferase (GNAT) family protein (AT1G24040) mRNA, complete cds /cds=p(51,1010) /gb=NM_179372
Pba.11228
WS02533.BR_B01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_B01 5', mRNA sequence /clone=WS02533_B01 /clone_end=5' /gb=DT481827
Pba.8649
WS02524.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_F20 3', mRNA sequence /clone=WS02524_F20 /clone_end=3' /gb=DT484071
Pth.17429
Populus trichocarpa clone WS0127_F22 unknown mRNA /cds=p(22,1011) /gb=EF148077
Pth.8649
WS02524.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_F20 3', mRNA sequence /clone=WS02524_F20 /clone_end=3' /gb=DT484071

Domain Architecture

Acetyltransf_1 PF00583 231462
DomainStartEndBit scoreE-value
Acetyltransf_113723030.65.6e-06

Sequences

protein sequence
transcript sequence