Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 232610

Identification

Species:
Physcomitrella patens
Gene model
232610
Description
fgenesh2_pm.scaffold_111000001
Family
C2C2-GATA
3D structure (top 5)
2KAE 1GNF 2VUT 4GAT
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

16797 Score: 1
232610 Score: 1
57561 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g05510.1 Score: 1
LOC_Os03g47970.1 Score: 1
LOC_Os06g48534.1 Score: 1

Physcomitrella patens

16797 Score: 1
232610 Score: 1

Vitis vinifera

GSVIVP00001890001 Score: 1
GSVIVP00029575001 Score: 1

Expression data

Expressed Sequence Tags

At.20286
Arabidopsis thaliana ZML1 (ZIM-LIKE 1); transcription factor (ZML1) mRNA, complete cds /cds=p(197,1090) /gb=NM_113012
At.26180
Arabidopsis thaliana ZML2 (ZIM-LIKE 2); transcription factor (ZML2) mRNA, complete cds /cds=p(468,1376) /gb=NM_104038
Mtr.3624
EST644617 GESD Medicago truncatula cDNA clone GESD-31N14, mRNA sequence /clone=GESD-31N14 /gb=CA991109
Os.13666
Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence /gb=AK288076
Os.2857
Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence /gb=AK105025
Os.6390
Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence /cds=p(50,1036) /gb=AK068931
Os.74746
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121E14, full insert sequence /gb=CT836527
Pba.1091
WS0257.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_C20 3', mRNA sequence /clone=WS0257_C20 /clone_end=3' /gb=CV245349
Ppa.14095
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_145290) mRNA, complete cds /cds=p(1,903) /gb=XM_001777694
Ppa.2077
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_57561) mRNA, complete cds /cds=p(1,1188) /gb=XM_001764571
Ppa.20898
CAYY32031.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY32031 5', mRNA sequence /clone=CAYY32031 /clone_end=5' /gb=FC359782
Pth.1091
WS0257.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_C20 3', mRNA sequence /clone=WS0257_C20 /clone_end=3' /gb=CV245349
Sbi.12470
OV2_23_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence /gb=BF656862
Sbi.8133
WOUND1_44_C09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_44_C09_A002 3', mRNA sequence /clone=WOUND1_44_C09_A002 /clone_end=3' /gb=CN146834 /gi=45987018
Sbi.9485
WOUND1_74_H08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_74_H08_A002 3', mRNA sequence /clone=WOUND1_74_H08_A002 /clone_end=3' /gb=CN151258 /gi=45994237
Vvi.1240
VVA018E12_54245 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVA018E12 5, mRNA sequence /clone=VVA018E12 /clone_end=5' /gb=BM437375
Vvi.12431
S1G03364 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G03364, mRNA sequence /clone=S1G03364 /gb=EE076015

Domain Architecture

tify PF06200 232610
DomainStartEndBit scoreE-value
tify12415956.77.8e-14
CCT_2189215352.8e-07
CCT19123575.41.8e-19
GATA26630357.25.8e-14

Sequences