Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 233020

Identification

Species:
Populus trichocarpa
Gene model
233020
Description
gw1.XI.1000.1
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

336188 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1

Coccomyxa sp. C-169

27437 Score: 1

Micromonas sp. RCC299

56462 Score: 1

Vitis vinifera

GSVIVP00035196001 Score: 1

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.43482
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT4G20400) mRNA, complete cds /cds=p(201,3065) /gb=NM_118159
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Hv.27190
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf42k21, mRNA sequence /gb=AK249502
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 233020
DomainStartEndBit scoreE-value
JmjN206496.86.8e-26
JmjC260376240.14.9e-69
zf-C5HC248353687.35.1e-23
FYRN61166067.44.7e-17
FYRC66375392.71.2e-24

Sequences