Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 234045

Identification

Species:
Populus trichocarpa
Gene model
234045
Description
gw1.XI.2025.1
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63 1WP9 3DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475211 Score: 1

Arabidopsis thaliana

AT1G61140.3 Score: 1
AT1G61140.1 Score: 0.992

Cyanidioschyzon merolae

CMI119C Score: 1

Carica papaya

evm.TU.supercontig_27.89 Score: 1

Coccomyxa sp. C-169

70968 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g57110.1 Score: 1
LOC_Os01g57110.2 Score: 0.97

Physcomitrella patens

189373 Score: 1

Sorghum bicolor

5053814 Score: 1

Selaginella moellendorffii

429547 Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.017
GSVIVP00004267001 Score: 1
GSVIVP00010086001 Score: 1

Expression data

Expressed Sequence Tags

At.15795
Arabidopsis thaliana putative DNA-binding protein (At1g50410) mRNA, complete cds /cds=p(190,3135) /gb=AY039939
At.36526
Arabidopsis thaliana EDA16 (embryo sac development arrest 16) (EDA16) mRNA, complete cds /cds=p(742,4110) /gb=NM_001124053
At.43523
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (AT3G20010) mRNA, complete cds /cds=p(1,3144) /gb=NM_112891
At.71074
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (AT1G11100) mRNA, complete cds /cds=p(1,3681) /gb=NM_100983
Os.15825
Oryza sativa Japonica Group cDNA clone:J033089H07, full insert sequence /cds=p(326,3481) /gb=AK102284
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Os.33780
Oryza sativa Japonica Group cDNA clone:J023054E15, full insert sequence /gb=AK070470
Ppa.15038
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_112295) mRNA, partial cds /cds=p(1,2190) /gb=XM_001752316
Ppa.2900
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1528) mRNA, complete cds /cds=p(1,4158) /gb=XM_001770935
Sbi.10681
OX1_64_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_64_A10_A002 5', mRNA sequence /clone=OX1_64_A10_A002 /clone_end=5' /gb=CN138552 /gi=45973096
Vvi.23513
S1G07975 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G07975, mRNA sequence /clone=S1G07975 /gb=EE077143

Domain Architecture

SNF2_N PF00176 234045
DomainStartEndBit scoreE-value
SNF2_N51458164.52.8e-46
zf-C3HC449653625.70.00011
Helicase_C66474277.63.9e-20

Sequences