Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 234989

Identification

Species:
Physcomitrella patens
Gene model
234989
Description
estExt_fgenesh2_pm.C_1080004
Family
HB
3D structure (top 5)
1B72 1NK2 2VI6 1E3O 1UHS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

147812 Score: 1
4745673 Score: 1
5048886 Score: 1

Physcomitrella patens

234989 Score: 1
6570 Score: 1
6648 Score: 1

Physcomitrella patens

120794 Score: 1
234989 Score: 1

Zea mays

GRMZM2G139963_P01 Score: 1
GRMZM2G178741_P02 Score: 1

Expression data

Expressed Sequence Tags

Ppa.10674
BY991514 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS139G11 5', mRNA sequence /clone=PPLS139G11 /clone_end=5' /gb=BY991514
Ppa.11132
Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds /cds=p(1,657) /gb=AB028080
Ppa.11823
Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds /cds=p(240,1277) /gb=AB028077
Ppa.14003
Physcomitrella patens mRNA for homeobox protein PpHB5, complete cds /cds=p(375,1298) /gb=AB028076
Ppa.161
Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds /cds=p(1,821) /gb=AB028073
Ppa.162
Physcomitrella patens mRNA for homeobox protein PpHB1, partial cds /cds=p(1,793) /gb=AB028072
Ppa.25898
DC936717 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs23c15 5', mRNA sequence /clone=ppgs23c15 /clone_end=5' /gb=DC936717
Ppa.8098
BY991229 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS138K14 5', mRNA sequence /clone=PPLS138K14 /clone_end=5' /gb=BY991229
Ppa.9753
BJ968285 ppsp full-length cDNA libary Physcomitrella patens subsp. patens cDNA clone ppsp46c11 5', mRNA sequence /clone=ppsp46c11 /clone_end=5' /gb=BJ968285

Domain Architecture

Homeobox PF00046 234989
DomainStartEndBit scoreE-value
Homeobox9915367.54.3e-17
HALZ154198514e-12

Sequences