Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 239

Identification

Species:
Ostreococcus lucimarinus
Gene model
239
Description
gwEuk.1.30.1
Family
Orphans
3D structure (top 5)
2F05 1E91 1G1E 2CR7 2CZY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477381 Score: 1

Arabidopsis thaliana

AT1G24190.1 Score: 1

Cyanidioschyzon merolae

CMQ125C Score: 1

Carica papaya

evm.TU.supercontig_5.312 Score: 1

Chlamydomonas reinhardtii

140464 Score: 1

Coccomyxa sp. C-169

82606 Score: 1

Micromonas sp. RCC299

55021 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g01960.1 Score: 1

Ostreococcus tauri

23208 Score: 1

Physcomitrella patens

188 Score: 1

Populus trichocarpa

797843 Score: 1

Sorghum bicolor

5001625 Score: 1

Selaginella moellendorffii

60165 Score: 1

Vitis vinifera

GSVIVP00028927001 Score: 1

Zea mays

GRMZM2G075320_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10309
Arabidopsis thaliana paired amphipathic helix repeat-containing protein (AT1G70060) mRNA, complete cds /cds=p(1,4089) /gb=NM_105674
At.41297
Arabidopsis thaliana unknown protein (AT3G01320) mRNA, complete cds /cds=p(76,4194) /gb=NM_110998
At.43354
Arabidopsis thaliana unknown protein (AT5G15020) mRNA, complete cds /cds=p(318,4421) /gb=NM_121506
At.47999
Arabidopsis thaliana ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) (ATSIN3/SIN3) mRNA, complete cds /cds=p(1,4062) /gb=NM_102265
Pba.5500
WS02549.C21_G12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_G12 3', mRNA sequence /clone=WS02549_G12 /clone_end=3' /gb=DT492003
Ppa.17144
Physcomitrella patens subsp. patens putative histone deacetylase complex, SIN3 component (SNT1502) mRNA, partial cds /cds=p(1,3957) /gb=XM_001784335
Pth.5500
WS02549.C21_G12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_G12 3', mRNA sequence /clone=WS02549_G12 /clone_end=3' /gb=DT492003

Domain Architecture

PAH PF02671 239
DomainStartEndBit scoreE-value
PAH257165.61.7e-16
PAH11916550.65.6e-12
PAH22226832.61.4e-06
HDAC_interact318416195.31.5e-55

Sequences