Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 241426

Identification

Species:
Populus trichocarpa
Gene model
241426
Description
gw1.XIII.1675.1
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

334149 Score: 1

Arabidopsis thaliana

AT1G08620.1 Score: 1

Cyanidioschyzon merolae

CMT461C Score: 1

Carica papaya

evm.TU.supercontig_162.51 Score: 1

Micromonas pusilla CCMP1545

19881 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g10770.1 Score: 1

Ostreococcus tauri

34223 Score: 1

Physcomitrella patens

136290 Score: 1

Populus trichocarpa

241426 Score: 1
248138 Score: 1

Sorghum bicolor

4897240 Score: 1
5056092 Score: 1

Selaginella moellendorffii

170257 Score: 1

Vitis vinifera

GSVIVP00002226001 Score: 1

Zea mays

GRMZM2G061170_P01 Score: 1
GRMZM2G107109_P02 Score: 0.995

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Hv.27190
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf42k21, mRNA sequence /gb=AK249502
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 241426
DomainStartEndBit scoreE-value
JmjN206495.91.2e-25
JmjC266382233.44.9e-67
zf-C5HC248954286.11.1e-22
FYRN71276168.12.9e-17
FYRC764858124.72.8e-34

Sequences