Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 241475

Identification

Species:
Populus trichocarpa
Gene model
241475
Description
gw1.XIII.1724.1
Family
SET
3D structure (top 5)
2F69 1H3I 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477698 Score: 1

Arabidopsis thaliana

AT3G04380.2 Score: 1
AT3G04380.1 Score: 0.966

Physcomitrella patens

3159 Score: 1

Vitis vinifera

GSVIVP00028515001 Score: 1

Expression data

Expressed Sequence Tags

At.10585
Arabidopsis thaliana SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (SUVR1) mRNA, complete cds /cds=p(102,2306) /gb=NM_100286
At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
At.27206
Arabidopsis thaliana Su(VAR)3-9-related protein 4 (SUVR4) mRNA, complete cds /cds=p(216,1682) /gb=AF408062
Os.53850
Oryza sativa Japonica Group cDNA clone:J023086A12, full insert sequence /cds=p(195,2420) /gb=AK100391
Ppa.19113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_3159) mRNA, partial cds /cds=p(1,966) /gb=XM_001785757
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

Pre-SET PF05033 241475
DomainStartEndBit scoreE-value
Pre-SET9223620.85.9e-06
SET238384137.24.7e-38

Sequences