Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 241918

Identification

Species:
Populus trichocarpa
Gene model
241918
Description
gw1.XIII.2167.1
Family
SET
3D structure (top 5)
2F69 2R3A 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477623 Score: 1

Arabidopsis thaliana

AT3G03750.2 Score: 1

Chlorella sp. NC64A

137958 Score: 1

Carica papaya

evm.TU.supercontig_161.23 Score: 1

Chlamydomonas reinhardtii

145254 Score: 1

Coccomyxa sp. C-169

28546 Score: 1

Micromonas pusilla CCMP1545

35752 Score: 1

Physcomitrella patens

112173 Score: 1

Sorghum bicolor

143658 Score: 1

Selaginella moellendorffii

166928 Score: 1

Vitis vinifera

GSVIVP00003847001 Score: 1

Zea mays

GRMZM2G105869_P02 Score: 1

Expression data

Expressed Sequence Tags

At.40936
Arabidopsis thaliana SET domain-containing protein (AT3G03750) mRNA, complete cds /cds=p(25,1089) /gb=NM_202483
Os.73676
CI186272 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa (japonica cultivar-group) cDNA clone 035-M063R-A12 3', mRNA sequence /clone=035-M063R-A12 /clone_end=3' /gb=CI186272

Domain Architecture

Pre-SET PF05033 241918
DomainStartEndBit scoreE-value
Pre-SET4117314.92.1e-05
SET175319121.62.3e-33

Sequences