Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 243333

Identification

Species:
Populus trichocarpa
Gene model
243333
Description
gw1.XIV.76.1
Family
SET
3D structure (top 5)
2F69 2R3A 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494600 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1
AT5G43990.1 Score: 0.948
AT5G43990.3 Score: 0.948
AT5G43990.4 Score: 0.948

Carica papaya

evm.TU.supercontig_87.14 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g40770.1 Score: 1
LOC_Os02g40770.2 Score: 1

Sorghum bicolor

5058210 Score: 1

Zea mays

GRMZM2G138115_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10585
Arabidopsis thaliana SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (SUVR1) mRNA, complete cds /cds=p(102,2306) /gb=NM_100286
At.27206
Arabidopsis thaliana Su(VAR)3-9-related protein 4 (SUVR4) mRNA, complete cds /cds=p(216,1682) /gb=AF408062
Ppa.19113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_3159) mRNA, partial cds /cds=p(1,966) /gb=XM_001785757
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

Pre-SET PF05033 243333
DomainStartEndBit scoreE-value
Pre-SET3945427.50.00011
SET544693142.71e-39

Sequences