Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 24342

Identification

Species:
Ostreococcus lucimarinus
Gene model
24342
Description
estExt_fgenesh1_pg.C_Chr_40023
Family
C3H
3D structure (top 5)
1MYO 2VGE 3DEO 1YCS 3F6Q
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

486038 Score: 1

Arabidopsis thaliana

AT2G40140.1 Score: 1
AT2G40140.2 Score: 1

Carica papaya

evm.TU.supercontig_112.7 Score: 1

Ostreococcus tauri

23564 Score: 1

Populus trichocarpa

576336 Score: 1

Selaginella moellendorffii

62212 Score: 1

Vitis vinifera

GSVIVP00024607001 Score: 1

Zea mays

GRMZM2G099622_P03 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742

Domain Architecture

Ank PF00023 24342
DomainStartEndBit scoreE-value
Ank518324.60.00037
Ank8612123.90.00058
zf-CCCH23125618.90.0044

Sequences