Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 246210

Identification

Species:
Populus trichocarpa
Gene model
246210
Description
gw1.XIV.2953.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.1951
Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds /cds=p(513,1718) /gb=AY125512
At.32971
Arabidopsis thaliana HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor (HSF1) mRNA, complete cds /cds=p(1,1488) /gb=NM_117884
At.5364
Arabidopsis thaliana HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (HSF3) mRNA, complete cds /cds=p(117,1562) /gb=NM_180501
At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
Hv.9738
HV_CEb0010C13f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0010C13f, mRNA sequence /clone=HV_CEb0010C13f /gb=BE216310
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.2152
Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence /cds=p(181,1503) /gb=AK109856
Os.40018
Oryza sativa spl7 mRNA for spl7 protein, complete cds /cds=p(358,1737) /gb=AB050098
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Ppa.23110
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108327) mRNA, complete cds /cds=p(1,1224) /gb=XM_001778961
Ppa.23943
CAYY25595.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY25595 5', mRNA sequence /clone=CAYY25595 /clone_end=5' /gb=FC349157
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 246210
DomainStartEndBit scoreE-value
HSF_DNA-bind2171216.65.8e-62

Sequences