Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 264791

Identification

Species:
Populus trichocarpa
Gene model
264791
Description
gw1.118.279.1
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

902613 Score: 1

Arabidopsis thaliana

AT2G35160.1 Score: 1

Chlamydomonas reinhardtii

6823 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g45990.1 Score: 1

Physcomitrella patens

174853 Score: 1

Sorghum bicolor

4874383 Score: 1

Selaginella moellendorffii

104841 Score: 1

Vitis vinifera

GSVIVP00013493001 Score: 1

Zea mays

GRMZM2G001103_P02 Score: 1
GRMZM2G124729_P02 Score: 1
GRMZM2G001103_P01 Score: 0.949
GRMZM2G124729_P01 Score: 0.949

Expression data

Expressed Sequence Tags

At.12724
Arabidopsis thaliana putative SET-domain protein (At2g35160; T4C15.17) mRNA, complete cds /cds=p(198,2582) /gb=AY062735
At.28511
Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds /cds=p(113,2485) /gb=AY065374
Os.48725
Oryza sativa Japonica Group cDNA clone:J013059A21, full insert sequence /gb=AK066297
Os.52449
Oryza sativa Japonica Group cDNA clone:J013096C06, full insert sequence /gb=AK067187
Os.80559
Oryza sativa (japonica cultivar-group) Os08g0400200 (Os08g0400200) mRNA, complete cds /cds=p(1,3879) /gb=NM_001068288

Domain Architecture

YDG_SRA PF02182 264791
DomainStartEndBit scoreE-value
YDG_SRA55211289.66.3e-84
Pre-SET235332137.92.9e-38
SET334490175.41.4e-49

Sequences