Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 26749

Identification

Species:
Physcomitrella patens
Gene model
26749
Description
gw1.13.180.1
Family
C2H2
3D structure (top 5)
2DLQ 1TF6 1UBD 2I13 2JP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

326585 Score: 1

Arabidopsis thaliana

AT5G22890.1 Score: 1

Populus trichocarpa

274037 Score: 1

Sorghum bicolor

4996284 Score: 1

Selaginella moellendorffii

68340 Score: 1

Expression data

Expressed Sequence Tags

At.31036
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16 /cds=p(63,1184) /gb=AK227740
At.64018
Arabidopsis thaliana STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1); nucleic acid binding / transcription factor/ zinc ion binding (STOP1) mRNA, complete cds /cds=p(189,1688) /gb=NM_179415
Hv.21079
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf151p02, mRNA sequence /gb=AK252406
Os.51657
Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence /gb=AK063290
Os.5755
Oryza sativa Japonica Group cDNA clone:J023088A12, full insert sequence /gb=AK071320
Os.75821
Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence /gb=AK287605
Os.76617
Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence /gb=AK243285
Os.79948
Oryza sativa (japonica cultivar-group) Os02g0573000 (Os02g0573000) mRNA, complete cds /cds=p(1,1683) /gb=NM_001053734
Os.8796
Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence /cds=p(1944,3512) /gb=AK100840
Ppa.2001
CAYY10204.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY10204 5', mRNA sequence /clone=CAYY10204 /clone_end=5' /gb=FC326178

Domain Architecture

zf-C2H2 PF00096 26749
DomainStartEndBit scoreE-value
zf-C2H2598131.33.5e-06

Sequences