Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 268058

Identification

Species:
Selaginella moellendorffii
Gene model
268058
Description
estExt_fgenesh1_pm.C_330022
Family
PHD
3D structure (top 5)
1WEP 1WEU 2RI7 2JMI 2E6S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Selaginella moellendorffii

268058 Score: 1
99900 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.2294
Oryza sativa (japonica cultivar-group) Os01g0887700 (Os01g0887700) mRNA, complete cds /cds=p(225,1043) /gb=NM_001051571
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.10575
DC957474 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs24h08 3', mRNA sequence /clone=ppgs24h08 /clone_end=3' /gb=DC957474
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 268058
DomainStartEndBit scoreE-value
PHD18523750.46.9e-12

Sequences