Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 277462

Identification

Species:
Populus trichocarpa
Gene model
277462
Description
gw1.197.11.1
Family
Sigma70-like
3D structure (top 5)
1L9Z 1RP3 1SIG 1L0O 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Sorghum bicolor

5010228 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697
Vvi.2394
CA32EN0005_IbF_D10 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0005_IbF_D10 5', mRNA sequence /clone=CA32EN0005_IbF_D10 /clone_end=5' /gb=CB343822

Domain Architecture

Sigma70_r2 PF04542 277462
DomainStartEndBit scoreE-value
Sigma70_r219026342.81.2e-09
Sigma70_r326734733.29.8e-07
Sigma70_r435741078.22.7e-20

Sequences

protein sequence
transcript sequence