Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 29724

Identification

Species:
Micromonas pusilla CCMP1545
Gene model
29724
Description
estExt_Genewise1.C_140237
Family
TRAF
3D structure (top 5)
2JDQ 2Z6H 1Y2A 1JDH 1WA5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488817 Score: 1

Arabidopsis thaliana

AT5G19330.1 Score: 1

Chlorella sp. NC64A

134999 Score: 1

Carica papaya

evm.TU.supercontig_147.26 Score: 1

Chlamydomonas reinhardtii

398723 Score: 1

Coccomyxa sp. C-169

81096 Score: 1

Micromonas sp. RCC299

66240 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g33050.1 Score: 1

Physcomitrella patens

106616 Score: 1

Populus trichocarpa

419382 Score: 1

Sorghum bicolor

5060460 Score: 1

Selaginella moellendorffii

164824 Score: 1

Vitis vinifera

GSVIVP00023713001 Score: 1

Zea mays

GRMZM2G100946_P01 Score: 1
GRMZM2G178375_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20128
Arabidopsis thaliana armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein (AT5G19330) mRNA, complete cds /cds=p(58,2190) /gb=NM_180521
Mtr.12877
AC0646 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615563
Ppa.18257
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106616) mRNA, complete cds /cds=p(1,2088) /gb=XM_001766720
Ppa.6194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106476) mRNA, complete cds /cds=p(1,2097) /gb=XM_001765868
Vvi.24033
WIN052.C21_F19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_F19 3', mRNA sequence /clone=WIN052_F19 /clone_end=3' /gb=EC934792

Domain Architecture

Arm PF00514 29724
DomainStartEndBit scoreE-value
Arm3078190.019
Arm8012044.44.5e-10
Arm12216240.28.4e-09
Arm16420425.80.00018
Arm206246283.8e-05
HEAT21224823.10.0011
Arm247287180.039
BTB44657645.32.5e-10

Sequences