Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 312743

Identification

Species:
Arabidopsis lyrata
Gene model
312743
Description
fgenesh1_pm.C_scaffold_1001523
Family
SET
3D structure (top 5)
2R3A 1ML9 2RFI 1MVH 3FDE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G17770.1 Score: 1

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.15818
Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds /cds=p(1,2082) /gb=AF344450
At.41816
Arabidopsis thaliana unknown protein (At1g17780) mRNA, complete cds /cds=p(605,1174) /gb=AY140070
At.66241
Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) (SDG21) mRNA, complete cds /cds=p(1,2268) /gb=NM_128034
At.70499
Arabidopsis thaliana unknown protein (AT2G16575) mRNA, complete cds /cds=p(1,513) /gb=NM_147323

Domain Architecture

AT_hook PF02178 312743
DomainStartEndBit scoreE-value
AT_hook13714914.20.094
YDG_SRA232386273.26.1e-79
Pre-SET415515134.33.8e-37
SET517671157.73.5e-44

Sequences