Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 313049

Identification

Species:
Arabidopsis lyrata
Gene model
313049
Description
fgenesh1_pm.C_scaffold_1001829
Family
C3H
3D structure (top 5)
2D9N 2RPP 3D2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

754535 Score: 1

Expression data

Expressed Sequence Tags

At.41647
Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein (AT1G21580) mRNA, complete cds /cds=p(149,5239) /gb=NM_102007
At.41648
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G21570) mRNA, complete cds /cds=p(1,1413) /gb=NM_102006
At.70934
AYAXY85TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG492221
Hv.29470
RUS113B09r HY Hordeum vulgare subsp. vulgare cDNA clone HY02I16, mRNA sequence /clone=HY02I16 /gb=FD524654
Mtr.21570
MEUAY59TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE351191
Os.18758
Oryza sativa (japonica cultivar-group) Os06g0638000 (Os06g0638000) mRNA, complete cds /cds=p(1,6207) /gb=NM_001064684
Pba.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Ppa.20585
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_161158) mRNA, complete cds /cds=p(1,6165) /gb=XM_001757970
Pth.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Vvi.5890
WIN025.TB24.1_B18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_B18 3', mRNA sequence /clone=WIN025_B18 /clone_end=3' /gb=EC924347

Domain Architecture

zf-CCCH PF00642 313049
DomainStartEndBit scoreE-value
zf-CCCH1903193010.20.068
zf-CCCH193119552.50.72
zf-CCCH1958198212.40.035
zf-CCCH1985201019.30.0043
zf-CCCH20112033150.016

Sequences