Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 317994

Identification

Species:
Arabidopsis lyrata
Gene model
317994
Description
fgenesh1_pm.C_scaffold_3001010
Family
C3H
3D structure (top 5)
2JVZ 2ANR 2HH2 2HH3 1WVN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G12130.1 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Carica papaya

evm.TU.supercontig_235.4 Score: 1
evm.TU.supercontig_235.5 Score: 1

Ostreococcus lucimarinus

93911 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10080.1 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Ostreococcus tauri

37617 Score: 1

Physcomitrella patens

182782 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Sorghum bicolor

4889482 Score: 1
5054839 Score: 1

Selaginella moellendorffii

75886 Score: 1

Vitis vinifera

GSVIVP00025374001 Score: 1

Expression data

Expressed Sequence Tags

At.27694
Arabidopsis thaliana KH domain-containing protein / zinc finger (CCCH type) family protein (AT3G12130) mRNA, complete cds /cds=p(191,937) /gb=NM_112048
At.43568
Arabidopsis thaliana clone 27460 mRNA, complete sequence /cds=p(168,890) /gb=AY086759
Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Os.5810
Oryza sativa Japonica Group cDNA clone:J033107K04, full insert sequence /cds=p(123,1052) /gb=AK121951
Pba.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Pth.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Sbi.1446
OX1_53_C02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_53_C02_A002 3', mRNA sequence /clone=OX1_53_C02_A002 /clone_end=3' /gb=CN136740 /gi=45969804
Vvi.15871
WIN0813.C21_O23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_O23 3', mRNA sequence /clone=WIN0813_O23 /clone_end=3' /gb=EC962242

Domain Architecture

zf-CCCH PF00642 317994
DomainStartEndBit scoreE-value
zf-CCCH376324.20.00054
KH_111517757.16.5e-14
zf-CCCH21223741.43.5e-09

Sequences