Details for gene 322431 - Plant Transcription Factor database

Species: Arabidopsis lyrata Gene model 322431 Description fgenesh1_pm.C_scaffold_4002488 Family TUB 3D structure (top 5) 2FIM 3C5N
	PDB entry:

JGI/DOE

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G47900.1 Score: 1
AT2G47900.2 Score: 1

Carica papaya

evm.TU.supercontig_9.163 Score: 1

Coccomyxa sp. C-169

25937 Score: 1

Micromonas pusilla CCMP1545

35442 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g22800.1 Score: 1

Ostreococcus tauri

12951 Score: 1

Physcomitrella patens

58364 Score: 1

Populus trichocarpa

820895 Score: 1

Sorghum bicolor

123770 Score: 1

Selaginella moellendorffii

83983 Score: 1

Vitis vinifera

GSVIVP00023594001 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.918
GRMZM2G114736_P01 Score: 0.918
GRMZM2G114736_P02 Score: 0.918

At.11339: Arabidopsis thaliana AtTLP5 (TUBBY LIKE PROTEIN 5); phosphoric diester hydrolase/ transcription factor (AtTLP5) mRNA, complete cds /cds=p(121,1410) /gb=NM_103489
At.17482: Arabidopsis thaliana AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (AtTLP1) mRNA, complete cds /cds=p(211,1578) /gb=NM_179563
At.23717: Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
At.27566: Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.46725: Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Hv.11650: Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148o16, mRNA sequence /gb=AK252121
Hv.3532: Hordeum vulgare subsp. vulgare cDNA clone: FLbaf138p02, mRNA sequence /gb=AK251904
Os.12718: Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216: Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.17428: Oryza sativa Japonica Group cDNA clone:J023042K06, full insert sequence /cds=p(797,1750) /gb=AK070139
Os.18696: Oryza sativa Japonica Group cDNA clone:J033087L15, full insert sequence /gb=AK102221
Os.19114: Oryza sativa Japonica Group cDNA clone:J013023N16, full insert sequence /gb=AK098928
Os.21061: Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.27120: Oryza sativa Japonica Group cDNA clone:J023001B21, full insert sequence /gb=AK120706
Os.61163: Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Ppa.17533: Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953: Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141: Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669: Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106
Vvi.6835: CAB40003_IVa_Fa_B10 Cabernet Sauvignon Berry - CAB4 Vitis vinifera cDNA clone CAB40003_IVa_Fa_B10 5', mRNA sequence /clone=CAB40003_IVa_Fa_B10 /clone_end=5' /gb=CB977099

Domain	Start	End	Bit score	E-value
F-box	50	105	28.7	2.4e-05
Tub	116	401	489.4	4.9e-144

protein sequence
transcript sequence

Gene model: 322431

Identification

Genome Databases

Orthologs and co-orthologs (in-paralogs)