Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 325295

Identification

Species:
Arabidopsis lyrata
Gene model
325295
Description
fgenesh1_pm.C_scaffold_6000515
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RPP 2RHK 3D2Q
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G06770.1 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Carica papaya

evm.TU.supercontig_235.4 Score: 1
evm.TU.supercontig_235.5 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Ostreococcus tauri

37617 Score: 1

Populus trichocarpa

416242 Score: 1

Arabidopsis lyrata

317994 Score: 1
325295 Score: 1

Sorghum bicolor

4889482 Score: 1
5054839 Score: 1

Expression data

Expressed Sequence Tags

At.27694
Arabidopsis thaliana KH domain-containing protein / zinc finger (CCCH type) family protein (AT3G12130) mRNA, complete cds /cds=p(191,937) /gb=NM_112048
At.43568
Arabidopsis thaliana clone 27460 mRNA, complete sequence /cds=p(168,890) /gb=AY086759
Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Os.4265
Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence /cds=p(1178,2080) /gb=AK242341
Sbi.1446
OX1_53_C02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_53_C02_A002 3', mRNA sequence /clone=OX1_53_C02_A002 /clone_end=3' /gb=CN136740 /gi=45969804
Vvi.13807
WIN1017.C21_C23 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN1017_C23 3', mRNA sequence /clone=WIN1017_C23 /clone_end=3' /gb=EC973909
Vvi.15871
WIN0813.C21_O23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_O23 3', mRNA sequence /clone=WIN0813_O23 /clone_end=3' /gb=EC962242

Domain Architecture

zf-CCCH PF00642 325295
DomainStartEndBit scoreE-value
zf-CCCH376325.40.00023
KH_111617853.67.6e-13
zf-CCCH207232461.5e-10

Sequences