Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 325972

Identification

Species:
Arabidopsis lyrata
Gene model
325972
Description
fgenesh1_pm.C_scaffold_6001192
Family
HB
3D structure (top 5)
1NK2 2E1O 2CUE 1JGG 2DMQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G15150.1 Score: 1

Expression data

Expressed Sequence Tags

At.41313
Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05 /cds=p(114,974) /gb=AK228890
At.49022
Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06 /cds=p(284,1228) /gb=AK229364
At.68137
987288 CERES-148 Arabidopsis thaliana cDNA clone 147623 3', mRNA sequence /clone=147623 /clone_end=3' /gb=DR380834
Mtr.15423
MTYEH21TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261238
Mtr.17800
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA /cds=m(1,800) /gb=BT051961
Mtr.1797
EST646165 HOGA Medicago truncatula cDNA clone HOGA-27L15, mRNA sequence /clone=HOGA-27L15 /gb=CB893373
Pth.10856
WS01227.B21.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_E04 3', mRNA sequence /clone=WS01227_E04 /clone_end=3' /gb=CV237288
Pth.12518
WS01224.B21.1_M07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_M07 3', mRNA sequence /clone=WS01224_M07 /clone_end=3' /gb=CV236620

Domain Architecture

Homeobox PF00046 325972
DomainStartEndBit scoreE-value
Homeobox11717172.41.6e-18
HALZ17221672.41.6e-18

Sequences