Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 328081

Identification

Species:
Arabidopsis lyrata
Gene model
328081
Description
fgenesh1_pm.C_scaffold_7000308
Family
HB
3D structure (top 5)
1PUF 1DU6 2DMN 1B72 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G36870.1 Score: 1
AT4G36870.2 Score: 1

Populus trichocarpa

218986 Score: 1

Vitis vinifera

GSVIVP00025022001 Score: 1

Expression data

Expressed Sequence Tags

At.12624
Arabidopsis thaliana BLH4 (SAWTOOTH 2); DNA binding / transcription factor (BLH4) mRNA, complete cds /cds=p(261,2144) /gb=NM_179713
At.48946
Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds /cds=p(853,3072) /gb=AY050459
At.50395
Arabidopsis thaliana BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH6) mRNA, complete cds /cds=p(325,1923) /gb=NM_119627
At.69176
Arabidopsis thaliana At4g34610 gene, complete cds /cds=p(1,1599) /gb=BT012291
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Os.17301
Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence /cds=p(231,1991) /gb=AK068029
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.50442
Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence /gb=AK121207
Ptp.6466
G126P33.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G126P33 3', mRNA sequence /clone=G126P33 /clone_end=3' /gb=CK093625
Sbi.14265
HS1_50_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_50_B01_A012 5', mRNA sequence /clone=HS1_50_B01_A012 /clone_end=5' /gb=CD210350 /gi=30945366
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 328081
DomainStartEndBit scoreE-value
POX300435265.31.5e-76
Homeobox4905485.20.0037

Sequences