Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 329122

Identification

Species:
Arabidopsis lyrata
Gene model
329122
Description
fgenesh1_pm.C_scaffold_7001349
Family
C3H
3D structure (top 5)
3EI3 1VYH 3FXT 1NR0 3DM0
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G25440.1 Score: 1

Expression data

Expressed Sequence Tags

At.29648
Arabidopsis thaliana WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative (AT5G51980) mRNA, complete cds /cds=p(181,1494) /gb=NM_124577
At.32255
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX828187
At.47131
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX828247
At.71142
Arabidopsis thaliana ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2); ADP-ribose diphosphatase/ NAD binding / hydrolase (ATNUDT2) mRNA, complete cds /cds=p(86,922) /gb=NM_124139
Hv.21110
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf171d02, mRNA sequence /gb=AK252654
Os.20757
Oryza sativa Japonica Group cDNA clone:J013116J21, full insert sequence /gb=AK072100
Os.23123
Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence /cds=p(295,1320) /gb=AK102324
Pth.12283
V055C02.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V055C02 3', mRNA sequence /clone=V055C02 /clone_end=3' /gb=DN492205
Ptp.4987
X011C04 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU894559
Vvi.1545
EST 3442 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT273H07 3', mRNA sequence /clone=TT273H07 /clone_end=3' /gb=BQ794504
Vvi.8771
VV_PEd0017f04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241399

Domain Architecture

zf-CCCH PF00642 329122
DomainStartEndBit scoreE-value
zf-CCCH10112625.30.00025
WD4013217031.82.8e-06
WD4025529123.40.00097
WD4029533131.82.7e-06
NUDIX49362961.63e-15

Sequences