Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 332532

Identification

Species:
Arabidopsis lyrata
Gene model
332532
Description
fgenesh1_pm.C_scaffold_8001875
Family
Jumonji
3D structure (top 5)
1VRB 2YU1 3D8C 2W2I 2OX0
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G63080.1 Score: 1

Chlorella sp. NC64A

28921 Score: 1

Coccomyxa sp. C-169

19092 Score: 1

Micromonas pusilla CCMP1545

17370 Score: 1

Micromonas sp. RCC299

59346 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g36630.1 Score: 1

Populus trichocarpa

776125 Score: 1

Sorghum bicolor

4878807 Score: 1

Selaginella moellendorffii

54256 Score: 1

Chlamydomonas reinhardtii

415885 Score: 1

Expression data

Expressed Sequence Tags

At.8831
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT5G63080) mRNA, complete cds /cds=p(124,1512) /gb=NM_125702
Os.33852
Oryza sativa Japonica Group cDNA clone:J033067F23, full insert sequence /gb=AK073801

Domain Architecture

JmjC PF02373 332532
DomainStartEndBit scoreE-value
JmjC16026862.61.5e-15

Sequences