Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 332974

Identification

Species:
Arabidopsis lyrata
Gene model
332974
Description
fgenesh1_pm.C_scaffold_9000002
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G13460.1 Score: 1
AT4G13460.2 Score: 1

Populus trichocarpa

229952 Score: 1

Sorghum bicolor

4789504 Score: 1

Vitis vinifera

GSVIVP00020373001 Score: 1

Arabidopsis lyrata

332974 Score: 1
902401 Score: 1

Zea mays

GRMZM2G025924_P01 Score: 1
GRMZM2G034288_P01 Score: 1
GRMZM2G078835_P02 Score: 1
GRMZM2G112145_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12115
Arabidopsis thaliana SUVH2 (SU(VAR)3-9 HOMOLOG 2) (SUVH2) mRNA, complete cds /cds=p(115,2070) /gb=NM_128889
At.3118
Arabidopsis thaliana SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding (SUVH9) mRNA, complete cds /cds=p(400,2352) /gb=NM_001036548
Os.26478
Oryza sativa Japonica Group cDNA clone:J013097K17, full insert sequence /cds=p(299,2353) /gb=AK067172

Domain Architecture

YDG_SRA PF02182 332974
DomainStartEndBit scoreE-value
YDG_SRA201356318.31.6e-92
Pre-SET3864851407.5e-39
SET487643133.95e-37

Sequences